Detailed information of SNP:
|
SNP ID:
sf0817998659(Gbrowse)
Chromosome: chr08 Position: 17998659 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 90.10% | 9.90% |
| All Indica | 776 | 83.12% | 16.88% |
| All Japonica | 495 | 99.39% | 0.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 360 | 92.22% | 7.78% |
| Indica II | 207 | 57.97% | 42.03% |
| Indica Intermediate | 209 | 92.34% | 7.66% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817998659 | G->T | INTERGENIC | None |