Detailed information of SNP:
|
SNP ID:
sf0818006906(Gbrowse)
Chromosome: chr08 Position: 18006906 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1373 | 95.78% | 4.22% |
| All Indica | 757 | 93.13% | 6.87% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 357 | 91.88% | 8.12% |
| Indica II | 192 | 94.79% | 5.21% |
| Indica Intermediate | 208 | 93.75% | 6.25% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818006906 | T->G | LOC_Os08g29360(LOC_Os08g29360.1) | INTRON |