Detailed information of SNP:
|
SNP ID:
sf0818030852(Gbrowse)
Chromosome: chr08 Position: 18030852 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 94.81% | 5.19% |
| All Indica | 793 | 97.86% | 2.14% |
| All Japonica | 497 | 89.74% | 10.26% |
| Aus | 61 | 95.08% | 4.92% |
| Indica I | 369 | 97.02% | 2.98% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818030852 | G->T | LOC_Os08g29410(LOC_Os08g29410.1) | INTRON |