Detailed information of SNP:
|
SNP ID:
sf0818031370(Gbrowse)
Chromosome: chr08 Position: 18031370 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 69.91% | 30.09% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 487 | 20.74% | 79.26% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 329 | 1.82% | 98.18% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 64 | 32.81% | 67.19% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818031370 | C->A | INTERGENIC | None |