Detailed information of SNP:
|
SNP ID:
sf0818040504(Gbrowse)
Chromosome: chr08 Position: 18040504 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1391 | 62.33% | 37.67% |
| All Indica | 783 | 36.53% | 63.47% |
| All Japonica | 494 | 98.58% | 1.42% |
| Aus | 61 | 88.52% | 11.48% |
| Indica I | 369 | 43.90% | 56.10% |
| Indica II | 209 | 17.70% | 82.30% |
| Indica Intermediate | 205 | 42.44% | 57.56% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 91 | 96.70% | 3.30% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818040504 | G->A | LOC_Os08g29430(LOC_Os08g29430.1) | Synonymous |