Detailed information of SNP:
|
SNP ID:
sf0818044840(Gbrowse)
Chromosome: chr08 Position: 18044840 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 76.71% | 23.29% |
| All Indica | 799 | 97.75% | 2.25% |
| All Japonica | 495 | 39.19% | 60.81% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 333 | 21.92% | 78.08% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818044840 | G->C | INTERGENIC | None |