Detailed information of SNP:
|
SNP ID:
sf0818049078(Gbrowse)
Chromosome: chr08 Position: 18049078 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 70.54% | 29.46% |
| All Indica | 778 | 91.00% | 9.00% |
| All Japonica | 481 | 33.89% | 66.11% |
| Aus | 63 | 88.89% | 11.11% |
| Indica I | 363 | 89.53% | 10.47% |
| Indica II | 210 | 90.48% | 9.52% |
| Indica Intermediate | 205 | 94.15% | 5.85% |
| Temperate Japonica | 334 | 20.06% | 79.94% |
| Tropical Japonica | 81 | 67.90% | 32.10% |
| Japonica Intermediate | 66 | 62.12% | 37.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818049078 | T->C | INTERGENIC | None |