Detailed information of SNP:
|
SNP ID:
sf0818055528(Gbrowse)
Chromosome: chr08 Position: 18055528 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 76.18% | 23.82% |
| All Indica | 799 | 97.75% | 2.25% |
| All Japonica | 497 | 38.63% | 61.37% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 21.19% | 78.81% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818055528 | T->G | INTERGENIC | None |