Detailed information of SNP:
|
SNP ID:
sf0818063542(Gbrowse)
Chromosome: chr08 Position: 18063542 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 64.83% | 35.17% |
| All Indica | 799 | 66.83% | 33.17% |
| All Japonica | 497 | 71.83% | 28.17% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 61.87% | 38.13% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 211 | 56.87% | 43.13% |
| Temperate Japonica | 335 | 80.00% | 20.00% |
| Tropical Japonica | 94 | 52.13% | 47.87% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818063542 | G->A | INTERGENIC | None |