Detailed information of SNP:
|
SNP ID:
sf0818067216(Gbrowse)
Chromosome: chr08 Position: 18067216 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 93.77% | 6.23% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 492 | 85.57% | 14.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 82.58% | 17.42% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 65 | 81.54% | 18.46% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818067216 | G->A | LOC_Os08g29480(LOC_Os08g29480.1) | Non-Synonymous SNP |