Detailed information of SNP:
|
SNP ID:
sf0818078978(Gbrowse)
Chromosome: chr08 Position: 18078978 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1258 | 87.44% | 12.56% |
| All Indica | 654 | 87.77% | 12.23% |
| All Japonica | 487 | 85.22% | 14.78% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 319 | 89.66% | 10.34% |
| Indica II | 156 | 83.33% | 16.67% |
| Indica Intermediate | 179 | 88.27% | 11.73% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 85 | 37.65% | 62.35% |
| Japonica Intermediate | 67 | 76.12% | 23.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 88.89% | 11.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818078978 | G->A | INTERGENIC | None |