Detailed information of SNP:
|
SNP ID:
sf0818153511(Gbrowse)
Chromosome: chr08 Position: 18153511 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 96.14% | 3.86% |
| All Indica | 792 | 99.37% | 0.63% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 58 | 22.41% | 77.59% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 206 | 99.51% | 0.49% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818153511 | C->T | INTERGENIC | None |