Detailed information of SNP:
|
SNP ID:
sf0818169776(Gbrowse)
Chromosome: chr08 Position: 18169776 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 61.63% | 38.37% |
| All Indica | 796 | 90.70% | 9.30% |
| All Japonica | 496 | 12.10% | 87.90% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 89.81% | 10.19% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 334 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 46.81% | 53.19% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818169776 | T->G | INTERGENIC | None |