Detailed information of SNP:
|
SNP ID:
sf0818174709(Gbrowse)
Chromosome: chr08 Position: 18174709 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1400 | 80.43% | 19.57% |
| All Indica | 784 | 79.85% | 20.15% |
| All Japonica | 493 | 80.73% | 19.27% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 69.65% | 30.35% |
| Indica II | 210 | 89.52% | 10.48% |
| Indica Intermediate | 205 | 88.29% | 11.71% |
| Temperate Japonica | 333 | 79.58% | 20.42% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 67 | 64.18% | 35.82% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818174709 | A->G | INTERGENIC | None |