Detailed information of SNP:
|
SNP ID:
sf0818175728(Gbrowse)
Chromosome: chr08 Position: 18175728 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1389 | 51.26% | 48.74% |
| All Indica | 769 | 60.99% | 39.01% |
| All Japonica | 497 | 29.58% | 70.42% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 352 | 69.89% | 30.11% |
| Indica II | 211 | 28.91% | 71.09% |
| Indica Intermediate | 206 | 78.64% | 21.36% |
| Temperate Japonica | 335 | 21.49% | 78.51% |
| Tropical Japonica | 94 | 46.81% | 53.19% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818175728 | A->G | INTERGENIC | None |