Detailed information of SNP:
|
SNP ID:
sf0818184180(Gbrowse)
Chromosome: chr08 Position: 18184180 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 95.59% | 4.41% |
| All Indica | 788 | 99.75% | 0.25% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 19.70% | 80.30% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 203 | 99.51% | 0.49% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818184180 | C->T | INTERGENIC | None |