Detailed information of SNP:
|
SNP ID:
sf0818226205(Gbrowse)
Chromosome: chr08 Position: 18226205 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 95.20% | 4.80% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818226205 | G->A | LOC_Os08g29690(LOC_Os08g29690.1) | Synonymous |