Detailed information of SNP:
|
SNP ID:
sf0818233371(Gbrowse)
Chromosome: chr08 Position: 18233371 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1378 | 95.57% | 4.43% |
| All Indica | 794 | 94.33% | 5.67% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 36 | 63.89% | 36.11% |
| Indica I | 371 | 95.42% | 4.58% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 94.59% | 5.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818233371 | T->C | INTERGENIC | None |