Detailed information of SNP:
|
SNP ID:
sf0818258057(Gbrowse)
Chromosome: chr08 Position: 18258057 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 82.23% | 17.77% |
| All Indica | 799 | 93.87% | 6.13% |
| All Japonica | 497 | 69.42% | 30.58% |
| Aus | 66 | 39.39% | 60.61% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 77.91% | 22.09% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818258057 | C->T | INTERGENIC | None |