Detailed information of SNP:
|
SNP ID:
sf0818339188(Gbrowse)
Chromosome: chr08 Position: 18339188 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1399 | 88.35% | 11.65% |
| All Indica | 786 | 87.91% | 12.09% |
| All Japonica | 490 | 93.88% | 6.12% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 374 | 94.65% | 5.35% |
| Indica II | 209 | 84.21% | 15.79% |
| Indica Intermediate | 203 | 79.31% | 20.69% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 63 | 98.41% | 1.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818339188 | T->C | LOC_Os08g29840(LOC_Os08g29840.1) | INTRON |