Detailed information of SNP:
|
SNP ID:
sf0818341109(Gbrowse)
Chromosome: chr08 Position: 18341109 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 87.28% | 12.72% |
| All Indica | 795 | 86.54% | 13.46% |
| All Japonica | 497 | 92.56% | 7.44% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 374 | 95.99% | 4.01% |
| Indica II | 212 | 81.60% | 18.40% |
| Indica Intermediate | 209 | 74.64% | 25.36% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818341109 | T->C | INTERGENIC | None |