Detailed information of SNP:
|
SNP ID:
sf0818391098(Gbrowse)
Chromosome: chr08 Position: 18391098 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 57.84% | 42.16% |
| All Indica | 798 | 35.84% | 64.16% |
| All Japonica | 488 | 92.42% | 7.58% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 26.67% | 73.33% |
| Indica II | 212 | 66.04% | 33.96% |
| Indica Intermediate | 211 | 21.80% | 78.20% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 85 | 78.82% | 21.18% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818391098 | T->C | INTERGENIC | None |