Detailed information of SNP:
|
SNP ID:
sf0818392518(Gbrowse)
Chromosome: chr08 Position: 18392518 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 94.36% | 5.64% |
| All Indica | 799 | 95.49% | 4.51% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818392518 | C->T | INTERGENIC | None |