Detailed information of SNP:
|
SNP ID:
sf0818393987(Gbrowse)
Chromosome: chr08 Position: 18393987 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 58.50% | 41.50% |
| All Indica | 799 | 35.79% | 64.21% |
| All Japonica | 490 | 94.08% | 5.92% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 26.93% | 73.07% |
| Indica II | 213 | 66.20% | 33.80% |
| Indica Intermediate | 211 | 20.85% | 79.15% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 87 | 78.16% | 21.84% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818393987 | C->G | INTERGENIC | None |