Detailed information of SNP:
|
SNP ID:
sf0818403782(Gbrowse)
Chromosome: chr08 Position: 18403782 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 93.58% | 6.42% |
| All Indica | 799 | 94.87% | 5.13% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 66 | 54.55% | 45.45% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818403782 | T->C | LOC_Os08g29970(LOC_Os08g29970.1) | INTRON |