Detailed information of SNP:
|
SNP ID:
sf0818414828(Gbrowse)
Chromosome: chr08 Position: 18414828 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 97.24% | 2.76% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 490 | 92.24% | 7.76% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 330 | 90.91% | 9.09% |
| Tropical Japonica | 92 | 93.48% | 6.52% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818414828 | C->T | LOC_Os08g29980(LOC_Os08g29980.1) | Non-Synonymous SNP |