Detailed information of SNP:
|
SNP ID:
sf0818439304(Gbrowse)
Chromosome: chr08 Position: 18439304 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1397 | 79.89% | 20.11% |
| All Indica | 792 | 73.11% | 26.89% |
| All Japonica | 483 | 92.34% | 7.66% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 69.87% | 30.13% |
| Indica II | 207 | 84.54% | 15.46% |
| Indica Intermediate | 210 | 67.62% | 32.38% |
| Temperate Japonica | 331 | 97.28% | 2.72% |
| Tropical Japonica | 84 | 79.76% | 20.24% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818439304 | A->G | INTERGENIC | None |