Detailed information of SNP:
|
SNP ID:
sf0818452975(Gbrowse)
Chromosome: chr08 Position: 18452975 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 98.10% | 1.90% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818452975 | C->T | LOC_Os08g30020(LOC_Os08g30020.4) | INTRON |
| sf0818452975 | C->T | LOC_Os08g30020(LOC_Os08g30020.5) | INTRON |
| sf0818452975 | C->T | LOC_Os08g30020(LOC_Os08g30020.3) | INTRON |
| sf0818452975 | C->T | LOC_Os08g30020(LOC_Os08g30020.2) | INTRON |
| sf0818452975 | C->T | LOC_Os08g30020(LOC_Os08g30020.6) | INTRON |
| sf0818452975 | C->T | LOC_Os08g30020(LOC_Os08g30020.1) | INTRON |