Detailed information of SNP:
|
SNP ID:
sf0818463796(Gbrowse)
Chromosome: chr08 Position: 18463796 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 88.64% | 11.36% |
| All Indica | 793 | 84.87% | 15.13% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 64 | 68.75% | 31.25% |
| Indica I | 371 | 81.40% | 18.60% |
| Indica II | 212 | 84.43% | 15.57% |
| Indica Intermediate | 210 | 91.43% | 8.57% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818463796 | A->C | INTERGENIC | None |