Detailed information of SNP:
|
SNP ID:
sf0818508974(Gbrowse)
Chromosome: chr08 Position: 18508974 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 59.00% | 41.00% |
| All Indica | 798 | 36.97% | 63.03% |
| All Japonica | 484 | 94.01% | 5.99% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 29.33% | 70.67% |
| Indica II | 213 | 66.67% | 33.33% |
| Indica Intermediate | 210 | 20.48% | 79.52% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 81 | 75.31% | 24.69% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818508974 | A->G | LOC_Os08g30110(LOC_Os08g30110.1) | Non-Synonymous SNP |