Detailed information of SNP:
|
SNP ID:
sf0818516704(Gbrowse)
Chromosome: chr08 Position: 18516704 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 81.53% | 18.47% |
| All Indica | 794 | 73.17% | 26.83% |
| All Japonica | 496 | 91.53% | 8.47% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 371 | 70.35% | 29.65% |
| Indica II | 213 | 85.92% | 14.08% |
| Indica Intermediate | 210 | 65.24% | 34.76% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818516704 | T->C | LOC_Os08g30120(LOC_Os08g30120.1) | INTRON |