Detailed information of SNP:
|
SNP ID:
sf0818518813(Gbrowse)
Chromosome: chr08 Position: 18518813 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 61.87% | 38.13% |
| All Indica | 799 | 39.17% | 60.83% |
| All Japonica | 497 | 91.15% | 8.85% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 29.33% | 70.67% |
| Indica II | 213 | 74.18% | 25.82% |
| Indica Intermediate | 211 | 21.33% | 78.67% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818518813 | T->C | INTERGENIC | None |