Detailed information of SNP:
|
SNP ID:
sf0818523199(Gbrowse)
Chromosome: chr08 Position: 18523199 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1348 | 93.03% | 6.97% |
| All Indica | 741 | 90.42% | 9.58% |
| All Japonica | 486 | 95.88% | 4.12% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 338 | 89.94% | 10.06% |
| Indica II | 208 | 95.19% | 4.81% |
| Indica Intermediate | 195 | 86.15% | 13.85% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 85 | 83.53% | 16.47% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818523199 | A->G | INTERGENIC | None |