Detailed information of SNP:
|
SNP ID:
sf0818527850(Gbrowse)
Chromosome: chr08 Position: 18527850 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 61.31% | 38.69% |
| All Indica | 799 | 64.96% | 35.04% |
| All Japonica | 497 | 48.89% | 51.11% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 60.53% | 39.47% |
| Indica II | 213 | 82.16% | 17.84% |
| Indica Intermediate | 211 | 55.45% | 44.55% |
| Temperate Japonica | 335 | 38.21% | 61.79% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818527850 | T->C | INTERGENIC | None |