Detailed information of SNP:
|
SNP ID:
sf0818541982(Gbrowse)
Chromosome: chr08 Position: 18541982 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1357 | 94.62% | 5.38% |
| All Indica | 737 | 90.37% | 9.63% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 332 | 81.93% | 18.07% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 193 | 94.30% | 5.70% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818541982 | T->C | INTERGENIC | None |