Detailed information of SNP:
|
SNP ID:
sf0818555772(Gbrowse)
Chromosome: chr08 Position: 18555772 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1340 | 56.64% | 43.36% |
| All Indica | 724 | 59.94% | 40.06% |
| All Japonica | 495 | 50.10% | 49.90% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 325 | 68.31% | 31.69% |
| Indica II | 207 | 31.88% | 68.12% |
| Indica Intermediate | 192 | 76.04% | 23.96% |
| Temperate Japonica | 334 | 60.48% | 39.52% |
| Tropical Japonica | 93 | 36.56% | 63.44% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818555772 | A->G | LOC_Os08g30190(LOC_Os08g30190.1) | INTRON |