Detailed information of SNP:
|
SNP ID:
sf0818571385(Gbrowse)
Chromosome: chr08 Position: 18571385 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 59.20% | 40.80% |
| All Indica | 799 | 91.74% | 8.26% |
| All Japonica | 497 | 9.86% | 90.14% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 87.73% | 12.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818571385 | C->A | INTERGENIC | None |