Detailed information of SNP:
|
SNP ID:
sf0818574702(Gbrowse)
Chromosome: chr08 Position: 18574702 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 87.63% | 12.37% |
| All Indica | 797 | 86.07% | 13.93% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 66 | 19.70% | 80.30% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 211 | 83.89% | 16.11% |
| Indica Intermediate | 211 | 70.14% | 29.86% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818574702 | C->T | INTERGENIC | None |