Detailed information of SNP:
|
SNP ID:
sf0818574992(Gbrowse)
Chromosome: chr08 Position: 18574992 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 58.13% | 41.87% |
| All Indica | 798 | 91.10% | 8.90% |
| All Japonica | 497 | 9.66% | 90.34% |
| Aus | 59 | 44.07% | 55.93% |
| Indica I | 375 | 87.20% | 12.80% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818574992 | A->G | INTERGENIC | None |