Detailed information of SNP:
|
SNP ID:
sf0818575010(Gbrowse)
Chromosome: chr08 Position: 18575010 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 58.70% | 41.30% |
| All Indica | 799 | 91.49% | 8.51% |
| All Japonica | 497 | 9.46% | 90.54% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 87.47% | 12.53% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818575010 | T->C | INTERGENIC | None |