Detailed information of SNP:
|
SNP ID:
sf0818597694(Gbrowse)
Chromosome: chr08 Position: 18597694 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 95.10% | 4.90% |
| All Indica | 793 | 96.34% | 3.66% |
| All Japonica | 493 | 92.29% | 7.71% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 211 | 96.68% | 3.32% |
| Indica Intermediate | 207 | 92.75% | 7.25% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 90 | 63.33% | 36.67% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818597694 | C->T | LOC_Os08g30260(LOC_Os08g30260.1) | Synonymous |