Detailed information of SNP:
|
SNP ID:
sf0818597942(Gbrowse)
Chromosome: chr08 Position: 18597942 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 95.22% | 4.78% |
| All Indica | 791 | 95.58% | 4.42% |
| All Japonica | 488 | 93.85% | 6.15% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 205 | 92.20% | 7.80% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 86 | 69.77% | 30.23% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818597942 | C->T | LOC_Os08g30260(LOC_Os08g30260.1) | Non-Synonymous SNP |