Detailed information of SNP:
|
SNP ID:
sf0818602065(Gbrowse)
Chromosome: chr08 Position: 18602065 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 80.44% | 19.56% |
| All Indica | 798 | 98.25% | 1.75% |
| All Japonica | 495 | 52.93% | 47.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 60.78% | 39.22% |
| Tropical Japonica | 93 | 46.24% | 53.76% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818602065 | C->T | INTERGENIC | None |