Detailed information of SNP:
|
SNP ID:
sf0818608261(Gbrowse)
Chromosome: chr08 Position: 18608261 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 78.27% | 21.73% |
| All Indica | 794 | 68.26% | 31.74% |
| All Japonica | 496 | 91.13% | 8.87% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 59.89% | 40.11% |
| Indica II | 210 | 90.95% | 9.05% |
| Indica Intermediate | 210 | 60.48% | 39.52% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818608261 | A->G | INTERGENIC | None |