Detailed information of SNP:
|
SNP ID:
sf0818611100(Gbrowse)
Chromosome: chr08 Position: 18611100 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 81.99% | 18.01% |
| All Indica | 796 | 74.25% | 25.75% |
| All Japonica | 497 | 91.15% | 8.85% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 62.93% | 37.07% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 208 | 72.12% | 27.88% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818611100 | T->C | INTERGENIC | None |