Detailed information of SNP:
|
SNP ID:
sf0818626199(Gbrowse)
Chromosome: chr08 Position: 18626199 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 95.00% | 5.00% |
| All Indica | 788 | 95.94% | 4.06% |
| All Japonica | 496 | 92.94% | 7.06% |
| Aus | 61 | 96.72% | 3.28% |
| Indica I | 372 | 97.31% | 2.69% |
| Indica II | 206 | 93.20% | 6.80% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 67.74% | 32.26% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818626199 | T->C | LOC_Os08g30280(LOC_Os08g30280.1) | Non-Synonymous SNP |