Detailed information of SNP:
|
SNP ID:
sf0818628576(Gbrowse)
Chromosome: chr08 Position: 18628576 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 91.48% | 8.52% |
| All Indica | 790 | 90.25% | 9.75% |
| All Japonica | 496 | 92.34% | 7.66% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 203 | 73.89% | 26.11% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 65.59% | 34.41% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818628576 | G->A | LOC_Os08g30280(LOC_Os08g30280.1) | INTRON |