Detailed information of SNP:
|
SNP ID:
sf0818629517(Gbrowse)
Chromosome: chr08 Position: 18629517 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 80.71% | 19.29% |
| All Indica | 797 | 93.35% | 6.65% |
| All Japonica | 486 | 56.58% | 43.42% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 91.69% | 8.31% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 326 | 42.02% | 57.98% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 66 | 75.76% | 24.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818629517 | A->G | INTERGENIC | None |