Detailed information of SNP:
|
SNP ID:
sf0818645493(Gbrowse)
Chromosome: chr08 Position: 18645493 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 96.60% | 3.40% |
| All Indica | 792 | 98.36% | 1.64% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 207 | 94.69% | 5.31% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818645493 | T->G | INTERGENIC | None |