Detailed information of SNP:
|
SNP ID:
sf0818649498(Gbrowse)
Chromosome: chr08 Position: 18649498 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1342 | 82.12% | 17.88% |
| All Indica | 724 | 68.65% | 31.35% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 368 | 83.97% | 16.03% |
| Indica II | 200 | 26.00% | 74.00% |
| Indica Intermediate | 156 | 87.18% | 12.82% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0818649498 | C->G | INTERGENIC | None |